Lucia Maddalena

NEWS

- EDITORIAL NEWS

-- Advancing Precision Medicine: Multi-Disciplinary Research and Emerging Strategies in Biomedical Informatics, Special Issue of IEEE Journal of Biomedical and Health Informatics. Extended deadline for submission: 30 May 2025.

-- Traditional and Machine Learning Methods to Solve Imaging Problems, Section Collection of Algorithms. Open for submissions.

- RECENT PUBLICATIONS, COMMUNICATIONS, SOFTWARE, and DATA

-- L. Maddalena, L. Antonelli, F. Polverino, I.A. Asteriti, F. Degrassi, G. Guarguaglini, A. Albu, A. Hada, and M.R. Guarracino, Machine Learning and Artificial Intelligence for Cell Biology Imaging, keynote talk at BIOMAT 2024, Kolympari, Chania, Greece, 27/10-1/11/2024.

-- I. Granata, L. Maddalena, M. Manzo, M.R. Guarracino, M. Giordano, HELP: A computational framework for labelling and predicting human common and context-specific essential genes, PLoS Computational Biology 20(9), DOI: 10.1371/journal.pcbi.1012076, 2024. Software and data available here and here.

-- L. Maddalena, D. Romano, F. Gregoretti, G. De Lucia, L. Antonelli, E. Soscia, G. Pontillo, C. Langella, F. Fazioli, C. Giusti, R. Varriale, KneeBones3Dify: Open-source software for segmentation and 3D reconstruction of knee bones from MRI data, SoftwareX 27, 101854, ISSN: 2352-7110, DOI: 10.1016/j.softx.2024.101854, 2024. Software available here. Data available here.

-- L. Maddalena, Artificial Intelligence for Cell Biology Imaging, invited presentation at 3D High Content Imaging for the Validation of New Anti-Cancer Molecules, Final workshop of the Regione Lazio research project INNOVA3DIMAGING, Rome, June 5, 2024. Slides available here.

-- L. Maddalena and L. Antonelli (Eds), Algorithms for Biomedical Image Analysis and Processing, Reprint of the Special Issue, Algorithms, ISBN: 978-3-0365-9760-7, DOI: 10.3390/books978-3-0365-9761-4, 2024.

-- M. Giordano, E. Falbo, L. Maddalena, M. Piccirillo, I. Granata, Untangling the Context-Specificity of Essential Genes by Means of Machine Learning: A Constructive Experience, Biomolecules 14(1), ISSN: 2218-273X, DOI: 10.3390/biom14010018, 2024. Data available here.

-- L. Antonelli, L. Maddalena, Special Issue on "Algorithms for Biomedical Image Analysis and Processing", Algorithms 16(12), Editorial, DOI: 10.3390/a16120544, 2023.

-- L. Antonelli, F. Polverino, A. Albu, A. Hada, I.A. Asteriti, F. Degrassi, G. Guarguaglini, L. Maddalena, M.R. Guarracino, ALFI: Cell cycle phenotype annotations of label-free time-lapse imaging data from cultured human cells, Scientific Data 10(677), DOI: 10.1038/s41597-023-02540-1, 2023. The ALFI dataset is available here.

-- I. Granata, M. Giordano, L. Maddalena, M. Manzo, M.R. Guarracino, Network-Based Computational Modeling to Unravel Gene Essentiality, in R.P. Mondaini (Ed), Trends in Biomathematics: Modeling Epidemiological, Neuronal, and Social Dynamics. BIOMAT 2022. Springer, Cham, DOI: 10.1007/978-3-031-33050-6_3, 2023.

-- Khachatryan, L., Xiang, Y., Ivanov, A. et al., Results and lessons learned from the sbv IMPROVER metagenomics diagnostics for inflammatory bowel disease challenge, Scientific Reports 13, 6303 DOI: 10.1038/s41598-023-33050-0, 2023.

-- M. Manzo, M. Giordano, L. Maddalena, M.R. Guarracino, I. Granata, Novel Data Science Methodologies for Essential Genes Identification Based on Network Analysis, In Dzemyda, G., Bernataviciene, J., Kacprzyk, J. (eds), Data Science in Applications. Studies in Computational Intelligence, Vol. 1084, Springer, Cham., DOI: 10.1007/978-3-031-24453-7_7, 2023. Related software and data available here.

-- L. Maddalena, I. Granata, M. Giordano, M. Manzo, M.R. Guarracino, Integrating Different Data Modalities for the Classification of Alzheimer's Disease Stages, SN Computer Science, vol. 4, no. 249, DOI: 10.1007/s42979-023-01688-2, 2023. Related software and data available here. Free view-only version available here.

-- I. Manipur, M. Giordano, M. Piccirillo, S. Parashuraman and L. Maddalena, Community Detection in Protein-Protein Interaction Networks and Applications, IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 20, no. 1, DOI: 10.1109/TCBB.2021.3138142, 2023. See also the Supplemental Material.